Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1134995 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1134995, End: 1135573, Length: 579

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012982:711122:717837717837718418582Hirschia baltica ATCC 49814, complete genomehypothetical protein1e-26119
NC_017047:2042346:204234620423462042921576Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-26119
NC_014837:1144500:115056711505671151148582Pantoea sp. At-9b chromosome, complete genomehypothetical protein2e-26119
NC_014834:2206119:225932422593242259902579Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein3e-25114
NC_010102:997417:101406910140691014638570Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-2097.8
NC_008781:2575213:258611825861182586711594Polaromonas naphthalenivorans CJ2, complete genomehypothetical protein1e-1892.8