Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1132416 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1132416, End: 1133834, Length: 1419

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009712:334143:3416643416643435681905Candidatus Methanoregula boonei 6A8, complete genomehypothetical protein3e-47189
NC_015437:164194:1731041731041750651962Selenomonas sputigena ATCC 35185 chromosome, complete genomeProtein of unknown function DUF20752e-37156
NC_013740:1218429:1240102124010212423302229Acidaminococcus fermentans DSM 20731, complete genomeNUDIX hydrolase8e-32138
NC_008322:373531:3735313735313754861956Shewanella sp. MR-7, complete genomehypothetical protein8e-31135
NC_008786:1298817:1301909130190913039302022Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein7e-30132
NC_007912:4661141:4673285467328546752581974Saccharophagus degradans 2-40, complete genomehypothetical protein8e-30131
NC_013192:107672:1231141231141249671854Leptotrichia buccalis DSM 1135, complete genomehypothetical protein4e-24113
NC_012489:4336790:4367528436752843695221995Gemmatimonas aurantiaca T-27, complete genomehypothetical protein6e-24112
NC_005363:2588852:2594436259443625963941959Bdellovibrio bacteriovorus HD100, complete genomehypothetical protein1e-23111
NC_013861:728648:7286487286487306181971Legionella longbeachae NSW150, complete genomehypothetical protein5e-22106