Pre_GI: BLASTP Hits

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Query: NC_004578:934867:949832 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 949832, End: 950149, Length: 318

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5336773:536201953620195362246228Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-33139
NC_003277:22257:3415534155351801026Salmonella typhimurium LT2 plasmid pSLT, complete sequencetype II secretion system protein7e-33139
NC_016861:22256:341483414835116969Salmonella enterica subsp. enterica serovar Typhimurium strphosphoribulokinase/uridine kinase family protein7e-33139
NC_015942:1047576:106702610670261067997972Acidithiobacillus ferrivorans SS3 chromosome, complete genomeAAA ATPase4e-32136
NC_019774:74131:807158071581686972Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceAAA ATPase7e-24109