Pre_GI: BLASTP Hits

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Query: NC_004578:568236:582174 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 582174, End: 583040, Length: 867

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013722:3117442:3126963312696331280571095Xanthomonas albilineans, complete genomeputative conjugal transfer protein2e-41169
NC_015379:6226661:6236400623640062374521053Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative type IV secretion system protein virB65e-39161
NC_010645:369408:3851343851343861861053Bordetella avium 197N, complete genomeconjugal transfer protein4e-38158
NC_002927:506183:5190955190955201471053Bordetella bronchiseptica RB50, complete genomeplasmid-related membrane protein1e-37156
NC_015458:2338437:2352774235277423538561083Pusillimonas sp. T7-7 chromosome, complete genomeTraH protein2e-34146
NC_009254:365812:3682773682773694401164Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTrbL/VirB6 plasmid conjugal transfer protein4e-1272
NC_010524:933191:9331919331919342281038Leptothrix cholodnii SP-6, complete genomeTrbL/VirB6 plasmid conjugal transfer protein1e-1067.4
NC_010676:2793237:2792080279208027932401161Burkholderia phytofirmans PsJN chromosome 2, complete sequenceTrbL/VirB6 plasmid conjugal transfer protein8e-0754.7