Pre_GI: BLASTP Hits

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Query: NC_004578:568236:579598 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 579598, End: 580119, Length: 522

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013722:3117442:312526331252633125847585Xanthomonas albilineans, complete genomehypothetical protein1e-30132
NC_002927:506183:523121523121523660540Bordetella bronchiseptica RB50, complete genomehypothetical 20.3 kDa protein2e-27121
NC_012969:2476318:250625825062582506785528Methylovorus glucosetrophus SIP3-4 chromosome, complete genome1e-21102
NC_009254:365812:379759379759380295537Burkholderia vietnamiensis G4 chromosome 3, complete sequenceplasmid-related protein3e-1374.7
NC_011000:3493575:350582535058253506349525Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein4e-1373.9
NC_011001:372185:394458394458394976519Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein7e-1373.6
NC_008060:341851:349376349376349963588Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceconserved hypothetical 20.3 kDa protein3e-1271.2
NC_014532:2664139:270668727066872707211525Halomonas elongata DSM 2581, complete genomehypothetical protein5e-1063.9
NC_014816:2446236:249179424917942492300507Asticcacaulis excentricus CB 48 chromosome 1, complete sequencehypothetical protein5e-0857.4