Pre_GI: BLASTP Hits

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Query: NC_004578:568236:571196 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 571196, End: 572326, Length: 1131

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:632869:6387376387376398581122Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein6e-148523
NC_016628:133841:1493281493281504401113Vibrio furnissii NCTC 11218 chromosome 2, complete sequencefilamentation induced by cAMP protein fic4e-99361
NC_016901:414670:4146704146704157971128Shewanella baltica OS678 chromosome, complete genomefilamentation induced by cAMP protein fic5e-91334
NC_009997:415808:4158084158084169351128Shewanella baltica OS195, complete genomefilamentation induced by cAMP protein Fic5e-91334
NC_016745:2161408:2167272216727221682761005Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein1e-87323
NC_009429:686608:6944836944836955801098Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein2e-72272
NC_007948:5026122:5045115504511550462361122Polaromonas sp. JS666, complete genomefilamentation induced by cAMP protein Fic7e-71268
NC_004757:2730057:2738984273898427401081125Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein1e-70267
NC_011883:2826000:2836832283683228379471116Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,filamentation induced by cAMP protein Fic3e-69262
NC_006677:1596560:1662771166277116639041134Gluconobacter oxydans 621H, complete genomehypothetical protein4e-69261
NC_020156:3157899:3174617317461731757381122Nonlabens dokdonensis DSW-6, complete genomefilamentation induced by cAMP protein Fic8e-69261
NC_003295:3688000:3689968368996836910831116Ralstonia solanacearum GMI1000, complete genomehypothetical protein1e-68260
NC_014006:2932959:2942921294292129440331113Sphingobium japonicum UT26S chromosome 1, complete genomecell filamentation protein3e-68259
NC_015458:2338437:2355979235597923571061128Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein1e-67257
NC_012918:928903:9782049782049793281125Geobacter sp. M21 chromosome, complete genomefilamentation induced by cAMP protein fic1e-67256
NC_009445:6621996:6649106664910666502361131Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein2e-67256
NC_014365:2888897:2890549289054928916761128Desulfarculus baarsii DSM 2075 chromosome, complete genomefilamentation induced by cAMP protein Fic2e-66253
NC_009485:3461051:3469791346979134709211131Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein5e-66251
NC_015577:3113907:3120238312023831213561119Treponema azotonutricium ZAS-9 chromosome, complete genomefilamentation induced by cAMP protein Fic1e-61236
NC_009524:861500:8647308647308658511122Psychrobacter sp. PRwf-1 chromosome, complete genomefilamentation induced by cAMP protein fic2e-60233
NC_014355:1223243:1228731122873112298371107Candidatus Nitrospira defluvii, complete genomehypothetical protein1e-57224
NC_009937:4392108:4408013440801344091161104Azorhizobium caulinodans ORS 571, complete genomeconserved hypothetical protein3e-57223
NC_008347:2515921:2525126252512625262561131Maricaulis maris MCS10, complete genomefilamentation induced by cAMP protein Fic1e-54214
NC_006677:1503513:1516480151648015175831104Gluconobacter oxydans 621H, complete genomehypothetical protein6e-51201
NC_017098:32196:4810948109492151107Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein5e-47188
NC_016901:414670:417333417333417821489Shewanella baltica OS678 chromosome, complete genome4e-35149
NC_010125:1:4883488370582176Gluconacetobacter diazotrophicus PAl 5, complete genome5e-34145
NC_009997:415808:418504418504418959456Shewanella baltica OS195, complete genomefilamentation induced by cAMP protein Fic6e-33142
NC_015730:3693391:371633137163313717223893Roseobacter litoralis Och 149 chromosome, complete genome6e-28125
NC_014632:1112733:1114065111406511152551191Ilyobacter polytropus DSM 2926 chromosome, complete genomefilamentation induced by cAMP protein fic3e-1583.2
NC_015730:1107840:1124793112479311258451053Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein2e-0963.9
NC_009455:173374:1963541963541975081155Dehalococcoides sp. BAV1 chromosome, complete genomefilamentation induced by cAMP protein fic3e-0963.2
NC_018750:4333064:4343077434307743442551179Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-0860.8
NC_002937:2068117:211999921199992120793795Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeFic family protein3e-0860.1
NC_012489:209016:2190002190002203611362Gemmatimonas aurantiaca T-27, complete genomehypothetical protein9e-0858.2
NC_008609:112340:1126921126921137411050Pelobacter propionicus DSM 2379, complete genomefilamentation induced by cAMP protein Fic2e-0757.4
NC_009051:2097271:2106187210618721074671281Methanoculleus marisnigri JR1, complete genomefilamentation induced by cAMP protein Fic3e-0756.6
NC_009714:1329573:1345833134583313469121080Campylobacter hominis ATCC BAA-381, complete genomeMloA5e-0755.8
NC_014814:483444:4873754873754885591185Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein7e-0755.5
NC_013716:3512950:3550474355047435515501077Citrobacter rodentium ICC168, complete genomehypothetical protein6e-0755.5
NC_009832:622969:6277976277976288731077Serratia proteamaculans 568, complete genomefilamentation induced by cAMP protein Fic7e-0755.1
NC_013730:5538323:5544324554432455454571134Spirosoma linguale DSM 74, complete genomefilamentation induced by cAMP protein Fic7e-0755.1
NC_018868:1352000:1355293135529313563991107Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomefilamentation induced by cAMP protein fic8e-0755.1
NC_012780:189949:1934311934311945761146Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencehypothetical protein1e-0654.7
NC_015497:4564339:458089645808964581147252Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome1e-0654.7
NC_015277:325207:3336163336163346591044Sphingobacterium sp. 21 chromosome, complete genometranscriptional regulator, MarR family1e-0654.7
NC_002927:960369:9675889675889686341047Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-0654.3
NC_008786:4579490:4582999458299945840541056Verminephrobacter eiseniae EF01-2, complete genomefilamentation induced by cAMP protein Fic2e-0653.9
NC_017518:1843705:1856948185694818583271380Neisseria meningitidis NZ-05/33 chromosome, complete genomeFic family protein4e-0652.8
NC_017505:1783476:1799813179981318012281416Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein5e-0652.4
NC_017514:446616:4929694929694943351367Neisseria meningitidis M01-240149 chromosome, complete genome5e-0652.4