Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5410639 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5410639, End: 5411769, Length: 1131

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:3048490:3074332307433230754021071Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-108392
NC_015152:2528399:2533932253393225349871056Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein8e-53207
NC_020410:198000:2090412090412100631023Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completehypothetical protein2e-39163
NC_011751:3048490:3051269305126930524411173Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-25116
NC_016845:4498097:4526128452612845274951368Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein1e-24114
NC_016589:2875000:2895713289571328969901278Burkholderia sp. YI23 chromosome 1, complete sequencehypothetical protein7e-22105
NC_014506:157396:1723031723031736581356Sulfurimonas autotrophica DSM 16294 chromosome, complete genomehypothetical protein2e-1997.1
NC_010729:619664:6471366471366485181383Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein2e-1687
NC_016818:1795576:1820764182076418221341371Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein6e-1685.5