Pre_GI: BLASTP Hits

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Query: NC_004578:4781326:4788681 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4788681, End: 4789817, Length: 1137

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015138:1582458:1587217158721715882511035Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein2e-113409
NC_015942:722980:7337707337707349181149Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein8e-86317
NC_008255:32455:4484744847459801134Cytophaga hutchinsonii ATCC 33406, complete genomezinc-related peptidase9e-75280
NC_008358:263458:2770202770202781741155Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein9e-1271.6
NC_014837:33014:4755647556486411086Pantoea sp. At-9b chromosome, complete genomehypothetical protein1e-0861.2
NC_003888:3893187:3904869390486939060411173Streptomyces coelicolor A3(2), complete genomeDNA-binding protein2e-0860.5
NC_015663:1356982:1364836136483613659241089Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein7e-0858.5
NC_014664:1560926:156991415699141570396483Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeprotein of unknown function DUF9555e-0755.8
NC_015738:1858455:185845518584551859231777Eggerthella sp. YY7918, complete genomeputative Zn peptidase5e-0755.8
NC_015510:4113505:4124881412488141260501170Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein6e-0755.5
NC_011891:1225000:1238780123878012400121233Anaeromyxobacter dehalogenans 2CP-1, complete genomehelix-turn-helix domain protein2e-0653.9
NC_006513:1379735:1427026142702614281951170Azoarcus sp. EbN1, complete genomeputative transcriptional regulator4e-0652.8