Pre_GI: BLASTP Hits

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Query: NC_004578:4708220:4713825 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4713825, End: 4714955, Length: 1131

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011386:3723019:3729887372988737311281242Oligotropha carboxidovorans OM5, complete genomeacyltransferase 37e-48191
NC_005296:2860000:2875224287522428764981275Rhodopseudomonas palustris CGA009, complete genomeputative opgC protein2e-45183
NC_014834:3130715:3133060313306031343491290Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein3e-45182
NC_009485:7626677:7626677762667776277741098Bradyrhizobium sp. BTAi1 chromosome, complete genomeopgC protein3e-43176
NC_011963:1482042:1482042148204214832411200Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceOpgC protein7e-22105
NC_011004:1136895:1146165114616511473281164Rhodopseudomonas palustris TIE-1, complete genome1e-1687.8
NC_008783:145305:1652121652121663181107Bartonella bacilliformis KC583, complete genomehypothetical protein3e-1686.3
NC_010623:188143:2062292062292074851257Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein6e-1685.5
NC_013851:3142182:3142182314218231433571176Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein4e-0756.2