Pre_GI: BLASTP Hits

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Query: NC_004578:3817330:3837000 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3837000, End: 3837509, Length: 510

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:4999946:502163250216325022141510Pseudomonas fluorescens F113 chromosome, complete genomePhage major tail tube protein9e-78288
NC_017033:1089579:108957910895791090082504Frateuria aurantia DSM 6220 chromosome, complete genomephage contractile tail tube protein, P2 family1e-50198
NC_008390:2018201:204105320410532041556504Burkholderia cepacia AMMD chromosome 1, complete sequencephage major tail tube protein1e-41168
NC_015381:2109500:211137221113722111875504Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage major tail tube protein4e-41167
NC_012724:3070386:308957330895733090076504Burkholderia glumae BGR1 chromosome 1, complete genomePhage major tail tube protein7e-41166
NC_015381:3457784:347791234779123478415504Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage major tail tube protein5e-41166
NC_012416:753500:760145760145760645501Wolbachia sp. wRi, complete genomecontractile tail tube protein9e-36149
NC_002978:549454:556386556386556883498Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage P2W3, contractile tail tube protein7e-34142
NC_010981:468465:478614478614479120507Wolbachia pipientis, complete genomePhage tail tube protein2e-33141
NC_010981:1371265:140788714078871408390504Wolbachia pipientis, complete genomeputative phage related protein5e-33140
NC_006576:856014:877551877551878054504Synechococcus elongatus PCC 6301, complete genomephage tail tube protein FII7e-30129
NC_012881:2310141:232829723282972328806510Desulfovibrio salexigens DSM 2638, complete genomephage major tail tube protein2e-28124
NC_008781:3508784:351174535117453512257513Polaromonas naphthalenivorans CJ2, complete genomephage major tail tube protein1e-23108
NC_020064:871338:885342885342885851510Serratia marcescens FGI94, complete genomephage contractile tail tube protein, P2 family6e-23106
NC_012560:3771861:379042137904213790936516Azotobacter vinelandii DJ, complete genomePhage P2 FII-like protein7e-23106
NC_021150:3771860:379042037904203790935516Azotobacter vinelandii CA6, complete genomePhage P2 FII-like protein7e-23106
NC_014228:3022903:303198430319843032499516Xenorhabdus nematophila ATCC 19061, complete genomeMajor tail tube protein (Protein FII)3e-22104
NC_015563:4959843:496250749625074963016510Delftia sp. Cs1-4 chromosome, complete genomephage major tail tube protein2e-21101
NC_015856:1182974:118421311842131184722510Collimonas fungivorans Ter331 chromosome, complete genomephage-related tail protein3e-21100
NC_003198:4453457:447956944795694480084516Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable major tail tube protein3e-2097.4
NC_006155:2084669:210209821020982102613516Yersinia pseudotuberculosis IP 32953, complete genomeputative tail tube protein FII (bacteriophage P2)3e-2097.4
NC_014837:3739408:375870937587093759224516Pantoea sp. At-9b chromosome, complete genomephage major tail tube protein2e-1995.1
NC_012724:1914740:192022419202241920733510Burkholderia glumae BGR1 chromosome 1, complete genomePhage major tail tube protein6e-1993.6
NC_007963:1552761:157239515723951572907513Chromohalobacter salexigens DSM 3043, complete genomephage major tail tube protein6e-1890.1
NC_012880:2480000:248512124851212485639519Dickeya dadantii Ech703, complete genomephage major tail tube protein3e-1787.8
NC_020181:5130513:517086851708685171386519Enterobacter aerogenes EA1509E, complete genomePhage major tail tube protein4e-1787
NC_016845:4077293:407966940796694080184516Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage tail tube protein2e-1478.6
NC_009648:3803622:380820338082033808718516Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail tube protein2e-1478.6
NC_012779:3016327:301974830197483020263516Edwardsiella ictaluri 93-146, complete genomephage major tail tube protein, putative2e-1478.6
NC_017059:3688688:370282237028223703337516Rhodospirillum photometricum DSM 122, complete genomePhage major tail tube protein (Probable bacteriophage tail tube protein FII)6e-1476.6
NC_016816:674171:675353675353675865513Pantoea ananatis LMG 5342, complete genomemajor tail tube protein (protein FII)4e-1373.9
NC_009801:2159123:217832421783242178836513Escherichia coli E24377A, complete genomehypothetical protein1e-1168.9
CP002797:1960000:197033719703371970849513Escherichia coli NA114, complete genomeputative phage tail tube protein2e-0962
NC_017192:1885457:191644619164461916943498Arcobacter sp. L, complete genomephage tail protein2e-0858.5
NC_017505:1013311:101662910166291017135507Neisseria meningitidis alpha710 chromosome, complete genomephage major tail tube protein FII3e-0857.8
NC_011750:2009889:202573320257332026254522Escherichia coli IAI39 chromosome, complete genomeputative phage tail core protein6e-0753.5
NC_016816:2073677:208044120804412080746306Pantoea ananatis LMG 5342, complete genomemajor tail tube protein (protein FII)7e-0650.1
NC_014376:916063:919705919705920220516Clostridium saccharolyticum WM1 chromosome, complete genomemajor tail tube protein8e-0649.7