Pre_GI: BLASTP Hits

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Query: NC_004578:2560473:2588498 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2588498, End: 2588812, Length: 315

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:1817598:186468118646811864995315Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein3e-34143
NC_008060:341851:362736362736363038303Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceprotein of unknown function DUF883, ElaB1e-1582
NC_015726:2817352:281959028195902819916327Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein5e-1063.2
NC_007973:2888824:289115928911592891434276Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF883, ElaB7e-0959.3
NC_014532:1191267:119642911964291196761333Halomonas elongata DSM 2581, complete genomeprotein of unknown function DUF883, ElaB7e-0856.2
NC_015061:4286000:428610342861034286405303Rahnella sp. Y9602 chromosome, complete genomehypothetical protein7e-0855.8
NC_017047:4379989:437998943799894380291303Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein7e-0855.8
NC_013716:5020204:503914350391435039448306Citrobacter rodentium ICC168, complete genomehypothetical protein7e-0855.8
NC_009778:3454790:345639634563963456698303Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-0855.8
NC_020260:3457597:345920334592033459505303Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-0855.8
NC_015410:3093465:309346530934653093845381Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein1e-0652