Pre_GI: BLASTP Hits

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Query: NC_004578:2185907:2205885 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2205885, End: 2206958, Length: 1074

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3823347:3823347382334738244471101Escherichia coli O26:H11 str. 11368 chromosome, complete genomeRNA 2'-O-ribose methyltransferase7e-94344
NC_010498:3023442:3023442302344230245421101Escherichia coli SMS-3-5, complete genomehypothetical protein7e-94344
NC_011745:3197584:3197584319758431986841101Escherichia coli ED1a chromosome, complete genomeputative RNA 2'-O-ribose methyltransferase1e-93343
NC_008321:3232000:3250368325036832514531086Shewanella sp. MR-4, complete genomehypothetical protein9e-93340
NC_014315:1668366:1680553168055316816171065Nitrosococcus watsoni C-113 chromosome, complete genomeribosomal RNA methyltransferase RrmJ/FtsJ2e-86319
NC_015276:1947936:1948702194870219497571056Marinomonas mediterranea MMB-1 chromosome, complete genomeRibosomal RNA large subunit methyltransferase M4e-77288