Pre_GI: BLASTP Hits

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Query: NC_004578:2185907:2187950 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2187950, End: 2188942, Length: 993

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:3851433:386469738646973865599903Pseudomonas syringae pv. phaseolicola 1448A, complete genomeesterase/lipase/thioesterase family protein3e-103375
NC_007005:4062311:407658640765864077374789Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein2e-101369
NC_007492:2035761:204096820409682041642675Pseudomonas fluorescens PfO-1, complete genomehypothetical protein5e-71268
NC_008820:1659612:166415916641591664818660Prochlorococcus marinus str. MIT 9303, complete genomeEsterase/lipase/thioesterase family active site1e-34147
NC_007513:942500:944069944069944626558Synechococcus sp. CC9902, complete genomeesterase/lipase/thioesterase family active site2e-32140
NC_008321:3232000:325208732520873252758672Shewanella sp. MR-4, complete genomehypothetical protein1e-28127
NC_015953:4908069:492420549242054924855651Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein6e-0962