Pre_GI: BLASTP Hits

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Query: NC_004578:1190000:1207129 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1207129, End: 1209657, Length: 2529

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009656:5505413:5516654551665455195362883Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-167589
NC_007973:3065632:3073902307390230761572256Ralstonia metallidurans CH34 chromosome 1, complete sequenceputative TraY/DotA-like type IV secretion system protein1e-38161
NC_007951:570500:5809595809595838772919Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein2e-29132
NC_009092:1127000:1141764114176411440762313Shewanella loihica PV-4, complete genomehypothetical protein5e-1894
NC_012969:2136243:2201751220175122039552205Methylovorus glucosetrophus SIP3-4 chromosome, complete genomehypothetical protein2e-1585.5
NC_015850:1006980:1009837100983710121972361Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein3e-0757.8
NC_020409:621792:6683296683296706112283Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completemembrane protein of unknown function5e-0757.4
NC_009256:2945059:2969035296903529716142580Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein7e-0653.5