Pre_GI: BLASTP Hits

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Query: NC_004547:3207776:3212530 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 3212530, End: 3212853, Length: 324

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:3817656:382144138214413821785345Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-25114
NC_004547:3817656:382837138283713828715345Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeconserved hypothetical protei8e-22102
NC_006155:4302826:430609543060954306448354Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein4e-1373.2
NC_010465:429095:447924447924448286363Yersinia pseudotuberculosis YPIII, complete genomeDomain of unknown function DUF1813, HSP20-like protein4e-1270.1
NC_014228:2883500:288409528840952884433339Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0960.8
NC_013592:1424560:143514414351441435287144Dickeya dadantii Ech586, complete genomehypothetical protein2e-0651.2