Pre_GI: BLASTP Hits

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Query: NC_004547:1970686:1992686 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1992686, End: 1993273, Length: 588

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:2921932:292193229219322922519588Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, TetR family2e-103374
NC_020211:1621000:163383016338301634417588Serratia marcescens WW4, complete genomeDNA-binding transcriptional repressor6e-79293
NC_014500:3023762:302946130294613030075615Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein BetI3e-75280
NC_020260:1993344:201212620121262012734609Cronobacter sakazakii Sp291, complete genometranscriptional regulator BetI3e-67254
NC_007946:289425:354713354713355318606Escherichia coli UTI89, complete genomeregulatory protein BetI8e-64243
NC_008253:334467:411406411406412011606Escherichia coli 536, complete genomeTetR-family regulatory protein8e-64243
NC_008563:318993:356305356305356901597Escherichia coli APEC O1, complete genomeregulatory protein BetI7e-64243
NC_011415:351810:368816368816369403588Escherichia coli SE11 chromosome, complete genometranscriptional regulator BetI7e-64243
NC_020063:3690308:369030836903083690895588Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator, TetR family4e-64243
NC_004431:364000:419239419239419844606Escherichia coli CFT073, complete genometranscriptional regulator BetI1e-63242
NC_014532:988351:994348994348994980633Halomonas elongata DSM 2581, complete genometranscriptional regulator BetI5e-57220
NC_017387:1110412:112071311207131121306594Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometranscriptional regulator BetI2e-44178
NC_007645:829500:846356846356846952597Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator8e-43173
NC_015733:3595882:359744735974473598091645Pseudomonas putida S16 chromosome, complete genomeTetR family transcriptional regulator3e-1271.6
NC_016584:3040887:304528830452883045887600Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator7e-0857
NC_019897:1577015:160920016092001609808609Thermobacillus composti KWC4 chromosome, complete genomehypothetical protein8e-0857
NC_014976:627935:639581639581640174594Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator3e-0755.1
NC_018681:2985078:299914729991472999767621Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein9e-0753.5
NC_014364:394899:399697399697400305609Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, TetR family2e-0652
NC_014666:8016066:802999880299988030690693Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, TetR family3e-0651.6