Pre_GI: BLASTP Hits

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Query: NC_004432:936500:940930 Mycoplasma penetrans HF-2, complete genome

Start: 940930, End: 941661, Length: 732

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014921:22828:313703137032101732Mycoplasma fermentans M64 chromosome, complete genomesugar isomerase sgae1e-78292
NC_006360:518808:518808518808519530723Mycoplasma hyopneumoniae 232, complete genomeL-ribulose-5-phosphate 4-epimerase2e-73275
NC_012912:325913:347639347639348331693Dickeya zeae Ech1591, complete genomeclass II aldolase/adducin family protein3e-58224
NC_006322:1994000:200264420026442003339696Bacillus licheniformis ATCC 14580, complete genomeL-ribulose-5-phosphate 4-epimerase1e-57223
NC_015687:1478668:148193414819341482635702Clostridium acetobutylicum DSM 1731 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase1e-56219
NC_013364:5083949:510903451090345109720687Escherichia coli O111:H- str. 11128, complete genomeL-ribulose 5-phosphate 4-epimerase UlaF1e-56219
NC_014829:1376253:138292513829251383623699Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase4e-56218
NC_014833:3161257:317642131764213177110690Ruminococcus albus 7 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase2e-54212
NC_013411:2767400:278901727890172789703687Geobacillus sp. Y412MC61, complete genomeL-ribulose-5-phosphate 4-epimerase1e-53209
NC_014915:1909275:192895319289531929639687Geobacillus sp. Y412MC52 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase1e-53209
NC_009328:1903291:190329119032911903977687Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase1e-53209
NC_014328:85290:118733118733119434702Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase3e-53208
NC_013205:2965110:296662829666282967338711Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,class II aldolase/adducin family protein3e-53208
NC_006510:1921541:194399019439901944676687Geobacillus kaustophilus HTA426, complete genomeL-ribulose-5-phosphate 4-epimerase4e-53207
NC_020210:1951746:196764619676461968332687Geobacillus sp. GHH01, complete genomeL-ribulose-5-phosphate 4-epimerase4e-53207
NC_014206:1694330:170996017099601710646687Geobacillus sp. C56-T3 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase5e-53207
NC_014655:2747399:276328327632832763981699Leadbetterella byssophila DSM 17132 chromosome, complete genomel-ribulose 5-phosphate 4-epimerase6e-52204
NC_009617:648000:658277658277658966690Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase1e-50199
NC_020211:3535622:355115735511573551849693Serratia marcescens WW4, complete genomeL-ribulose-5-phosphate 4-epimerase3e-50198
NC_015385:2505977:251229025122902513006717Treponema succinifaciens DSM 2489 chromosome, complete genomeL-ribulose-5-phosphate 4-epimerase5e-43174
NC_013642:942767:954194954194954832639Thermotoga naphthophila RKU-10, complete genomeclass II aldolase/adducin family protein2e-1996.3
NC_010407:151599:155424155424156134711Clavibacter michiganensis subsp. sepedonicus chromosome, completeL-ribulose-5-phosphate 4-epimerase2e-1892.8
NC_007503:1383255:139086213908621391494633Carboxydothermus hydrogenoformans Z-2901, complete genomeL-fuculose phosphate aldolase4e-1168.6
NC_015389:616430:627050627050627712663Coriobacterium glomerans PW2 chromosome, complete genomeclass II aldolase/adducin family protein5e-1064.7
NC_014363:114239:124635124635125315681Olsenella uli DSM 7084 chromosome, complete genomeclass II aldolase/adducin family protein1e-0860.1
NC_019974:1184871:1222117122211712234451329Natronococcus occultus SP4, complete genomeribulose-5-phosphate 4-epimerase-like epimerase or aldolase3e-0858.9
NC_011899:1969187:197188519718851972529645Halothermothrix orenii H 168, complete genomeL-fuculose phosphate aldolase6e-0858.2
NC_011899:1021672:103940510394051040049645Halothermothrix orenii H 168, complete genomeclass II aldolase/adducin family protein5e-0858.2
NC_007498:3540945:354094535409453541607663Pelobacter carbinolicus DSM 2380, complete genomeL-fuculose-1-phosphate aldolase1e-0757
NC_018644:210627:230860230860231501642Alpha proteobacterium HIMB59 chromosome, complete genomealdolase class II-like protein2e-0756.2
NC_014218:1619982:162355716235571623949393Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeclass II aldolase/adducin family protein3e-0755.8
NC_012881:3362955:336295533629553363608654Desulfovibrio salexigens DSM 2638, complete genomeclass II aldolase/adducin family protein4e-0755.1
NC_014011:527681:531124531124531765642Aminobacterium colombiense DSM 12261 chromosome, complete genomeclass II aldolase/adducin family protein5e-0754.7
NC_015958:1516944:153105415310541531764711Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeclass II aldolase/adducin family protein1e-0653.9
NC_021182:3771523:378378737837873784449663Clostridium pasteurianum BC1, complete genomeribulose-5-phosphate 4-epimerase-like epimerase or aldolase8e-0650.8
NC_002689:1507900:152602615260261526682657Thermoplasma volcanium GSS1, complete genomeL-fuculose-phosphate aldolase1e-0550.4