Pre_GI: BLASTP Hits

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Query: NC_004347:4007847:4013115 Shewanella oneidensis MR-1, complete genome

Start: 4013115, End: 4014221, Length: 1107

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008321:3815940:3819576381957638210211446Shewanella sp. MR-4, complete genomephage integrase family protein0708
NC_009379:1910891:1922198192219819236101413Polynucleobacter sp. QLW-P1DMWA-1, complete genomephage integrase family protein5e-28125
NC_007626:2283793:2300331230033123015481218Magnetospirillum magneticum AMB-1, complete genomeIntegrase8e-25114
NC_007626:4135961:4158935415893541603861452Magnetospirillum magneticum AMB-1, complete genomehypothetical protein9e-25114
NC_014006:611592:6171336171336184881356Sphingobium japonicum UT26S chromosome 1, complete genomeputative integrase2e-23110
NC_007626:2283793:2295491229549122967081218Magnetospirillum magneticum AMB-1, complete genomeIntegrase6e-23108
NC_016026:1224129:1252592125259212539171326Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage integrase family protein1e-21104
NC_016026:1760856:1773310177331017745211212Micavibrio aeruginosavorus ARL-13 chromosome, complete genomephage integrase family protein4e-21102
NC_013858:416000:4203274203274215921266Azospirillum sp. B510 plasmid pAB510d, complete sequencehypothetical protein7e-1995.1
NC_007626:4688777:4693154469315446944911338Magnetospirillum magneticum AMB-1, complete genomehypothetical protein8e-1994.7
NC_012988:32996:5143051430527401311Methylobacterium extorquens DM4, complete genomesite-specific recombinase3e-1892.8
NC_014010:1392536:1397394139739413986591266Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeIntegrase1e-1688.2
NC_013209:2782500:278789727878972788706810Acetobacter pasteurianus IFO 3283-01, complete genomephage DNA recombinase9e-1788.2
NC_017100:2782303:278768927876892788498810Acetobacter pasteurianus IFO 3283-03, complete genomephage DNA recombinase9e-1788.2
NC_017108:2779303:278502627850262785835810Acetobacter pasteurianus IFO 3283-12, complete genomephage DNA recombinase9e-1788.2
NC_017111:2779321:278504427850442785853810Acetobacter pasteurianus IFO 3283-32, complete genomephage DNA recombinase9e-1788.2
NC_017121:2781000:278644627864462787255810Acetobacter pasteurianus IFO 3283-07, complete genomephage DNA recombinase9e-1788.2
NC_017125:2782283:278766927876692788478810Acetobacter pasteurianus IFO 3283-22, complete genomephage DNA recombinase9e-1788.2
NC_017146:2782325:278771127877112788520810Acetobacter pasteurianus IFO 3283-26, complete genomephage DNA recombinase9e-1788.2
NC_017150:2689920:269564326956432696452810Acetobacter pasteurianus IFO 3283-01-42C, complete genomephage DNA recombinase9e-1788.2
NC_011757:97281:1112141112141125361323Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein2e-1584
NC_012483:729000:7325207325207339471428Acidobacterium capsulatum ATCC 51196, complete genomephage integrase family protein1e-1584
NC_010172:57500:1059661059661072881323Methylobacterium extorquens PA1, complete genomeintegrase family protein4e-1582.4
NC_016027:1647110:1655396165539616566311236Gluconacetobacter xylinus NBRC 3288, complete genomephage DNA recombinase2e-1480.1
NC_014010:1489910:149813114981311498952822Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeIntegrase9e-1374.7
NC_011365:592256:6002746002746015151242Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase family protein1e-1171.2
NC_007626:3522265:3556004355600435577071704Magnetospirillum magneticum AMB-1, complete genomehypothetical protein8e-0961.6
NC_011884:1541256:1544677154467715458521176Cyanothece sp. PCC 7425, complete genomeintegrase family protein5e-0858.9
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase7e-0755.1
NC_008820:2512518:2520796252079625223131518Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein7e-0755.1
NC_015064:2341152:2360406236040623614641059Acidobacterium sp. MP5ACTX9 chromosome, complete genomeintegrase family protein8e-0755.1
NC_007575:1694877:1714292171429217153981107Sulfurimonas denitrificans DSM 1251, complete genomePhage integrase2e-0653.9
NC_014657:1775929:178774917877491788348600Caldicellulosiruptor owensensis OL chromosome, complete genome3e-0653.1
NC_007626:3522265:357110835711083571860753Magnetospirillum magneticum AMB-1, complete genomehypothetical protein3e-0653.1
NC_015975:752927:7675827675827686791098Lactobacillus ruminis ATCC 27782 chromosome, complete genomeintegrase3e-0653.1
NC_013722:2150882:2175502217550221766951194Xanthomonas albilineans, complete genomeputative phage-related integrase protein3e-0653.1
NC_005071:2223795:2239027223902722405561530Prochlorococcus marinus str. MIT 9313, complete genomePhage integrase4e-0652.8
NC_014624:3463272:348210034821003483014915Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-0652
NC_020911:3410857:341642334164233416935513Octadecabacter antarcticus 307, complete genomehypothetical protein7e-0652