Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3707550 Shigella flexneri 2a str. 301, complete genome

Start: 3707550, End: 3708545, Length: 996

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:3780000:379700537970053798000996Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-148524
NC_013971:3713000:372659137265913727586996Erwinia amylovora ATCC 49946 chromosome, complete genomemembrane protein1e-106386
NC_013961:3709800:372633337263333727328996Erwinia amylovora, complete genomeInner membrane protein yiaH1e-106386
NC_012214:3931824:394827639482763949271996Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-104379
NC_014837:33014:594465944660441996Pantoea sp. At-9b chromosome, complete genomeacyltransferase 31e-100366
NC_015224:4426167:445065844506584451650993Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein4e-100364
NC_016779:5189139:5189139518913951901701032Bacillus cereus F837/76 chromosome, complete genomehypothetical protein1e-1480.9
NC_005957:5203915:5203915520391552049461032Bacillus thuringiensis serovar konkukian str. 97-27, completehypothetical protein2e-1377
NC_020418:3102460:3107917310791731089301014Morganella morganii subsp. morganii KT, complete genomehypothetical protein5e-1272.4
NC_013592:2338403:2348467234846723494711005Dickeya dadantii Ech586, complete genomeacyltransferase 32e-0860.5
NC_013716:1138441:114852011485201149518999Citrobacter rodentium ICC168, complete genomeputative prophage membrane protein6e-0858.5
NC_014500:2402881:2413290241329024142941005Dickeya dadantii 3937 chromosome, complete genomeIntegral membrane protein1e-0654.3
NC_008942:1446682:1458662145866214598011140Methanocorpusculum labreanum Z, complete genomehypothetical protein6e-0652