Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3646450 Shigella flexneri 2a str. 301, complete genome

Start: 3646450, End: 3648510, Length: 2061

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:860571:8834498834498854912043Pseudomonas mendocina ymp, complete genomeAsmA family protein3e-170598
NC_002927:4392768:4411969441196944140772109Bordetella bronchiseptica RB50, complete genomeexported protein, conserved6e-170598
NC_012856:798922:8198258198258221222298Ralstonia pickettii 12D chromosome 1, complete genomeAsmA family protein3e-141502
NC_009074:2117500:2140878214087821433702493Burkholderia pseudomallei 668 chromosome I, complete sequenceAsmA family protein5e-118425
NC_010508:1980689:1997458199745819997552298Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceAsmA family protein5e-114412
NC_008752:2936933:2936933293693329392212289Acidovorax avenae subsp. citrulli AAC00-1, complete genomeAsmA family protein3e-98360
NC_015731:2460248:2464912246491224668581947Nitrosomonas sp. Is79A3 chromosome, complete genomeAsmA family protein3e-55216
NC_013209:1406793:1419835141983514219822148Acetobacter pasteurianus IFO 3283-01, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017100:1407804:1420846142084614229932148Acetobacter pasteurianus IFO 3283-03, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017108:1406787:1419829141982914219762148Acetobacter pasteurianus IFO 3283-12, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017111:1406787:1419829141982914219762148Acetobacter pasteurianus IFO 3283-32, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017121:1406787:1419829141982914219762148Acetobacter pasteurianus IFO 3283-07, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017125:1407804:1420846142084614229932148Acetobacter pasteurianus IFO 3283-22, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017146:1407804:1420846142084614229932148Acetobacter pasteurianus IFO 3283-26, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_017150:1406793:1419835141983514219822148Acetobacter pasteurianus IFO 3283-01-42C, complete genomelipopolysaccharide biogenesis periplasmic protein AsmA8e-37155
NC_010125:3854957:3873204387320438752282025Gluconacetobacter diazotrophicus PAl 5, complete genomeputative outer membrane biogenesis protein6e-30132