Pre_GI: BLASTP Hits

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Query: NC_004337:309833:313947 Shigella flexneri 2a str. 301, complete genome

Start: 313947, End: 314252, Length: 306

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:2342986:235970023597002360005306Escherichia coli BW2952 chromosome, complete genomeCPS-53 (KpLE1) prophage protein7e-52202
NC_000913:2455037:247389524738952474200306Escherichia coli K12, complete genomeCPS-53 (KpLE1) prophage; predicted protein7e-52202
NC_010473:2548946:256566025656602565965306Escherichia coli str. K-12 substr. DH10B, complete genomeCPS-53 (KpLE1) prophage; predicted protein7e-52202
AC_000091:2462461:248131924813192481624306Escherichia coli W3110 DNA, complete genomehypothetical protein7e-52202
NC_011750:5045927:505521750552175055564348Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-27120
NC_013361:3651150:365492736549273655790864Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-1374.3
NC_013008:3231414:324675732467573247374618Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1373.2
NC_011353:3276734:329188632918863292503618Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-1373.2
NC_002655:1332961:133323813332381333861624Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by bacteriophage BP-933W4e-1373.2
NC_004431:1401681:140223214022321402507276Escherichia coli CFT073, complete genomehypothetical protein6e-1372.8
NC_013282:1200993:122032912203291220601273Cronobacter turicensis, complete genomehypothetical protein2e-0754.7