Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3111836 Shigella flexneri 2a str. 301, complete genome

Start: 3111836, End: 3112240, Length: 405

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:3513147:353848635384863538908423Escherichia coli CFT073, complete genomeProtein glcG1e-63241
NC_017328:3088907:314943131494313149835405Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-63240
NC_004741:3041294:310049931004993100903405Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-63240
NC_021150:4350461:437212443721244372489366Azotobacter vinelandii CA6, complete genomeglyoxylate glcG protein2e-40164
NC_012560:4350465:437212843721284372493366Azotobacter vinelandii DJ, complete genomeglyoxylate glcG protein2e-40164
NC_010524:3094303:311173831117383112145408Leptothrix cholodnii SP-6, complete genomeprotein of unknown function DUF3369e-30128
NC_011992:1505106:150805215080521508459408Acidovorax ebreus TPSY, complete genomeprotein of unknown function DUF3361e-28124
NC_014910:2585747:260295626029562603363408Alicycliphilus denitrificans BC chromosome, complete genomehypothetical protein1e-24111
NC_010002:3357752:336297433629743363390417Delftia acidovorans SPH-1, complete genomeprotein of unknown function DUF3365e-22103
NC_006513:2708213:272685827268582727304447Azoarcus sp. EbN1, complete genomeuncharacterized protein, possibly involved in utilization of glycolate or propanediol6e-2095.9
NC_016631:4530000:453003145300314530549519Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein2e-1373.9
NC_010511:637214:646715646715647227513Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein3e-1270.5
NC_015733:3736104:378789037878903788057168Pseudomonas putida S16 chromosome, complete genomeGlcG protein4e-1167
NC_015497:3497680:352011835201183520543426Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomehypothetical protein3e-1167
NC_007298:1418500:145800214580021458445444Dechloromonas aromatica RCB, complete genomeProtein of unknown function DUF3362e-1064.3
NC_002754:1061851:106391710639171064336420Sulfolobus solfataricus P2, complete genomehypothetical protein1e-0858.9
NC_009648:3803622:384911138491113849542432Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein6e-0753.1
NC_012726:346539:353062353062353481420Sulfolobus islandicus M.16.4 chromosome, complete genomehypothetical protein7e-0752.8
NC_017275:377800:383651383651384070420Sulfolobus islandicus HVE10/4 chromosome, complete genomehypothetical protein7e-0752.8
NC_017276:337286:343962343962344381420Sulfolobus islandicus REY15A chromosome, complete genomehypothetical protein7e-0752.8
NC_013769:316789:341878341878342297420Sulfolobus islandicus L.D.8.5 chromosome, complete genomehypothetical protein8e-0752.4
NC_012589:347020:353534353534353953420Sulfolobus islandicus L.S.2.15, complete genomeprotein of unknown function DUF3361e-0651.6
NC_013730:3137391:314857931485793148977399Spirosoma linguale DSM 74, complete genomeprotein of unknown function DUF3368e-0649.3
NC_007973:1411714:143719814371981437647450Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3369e-0648.9