Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3085141 Shigella flexneri 2a str. 301, complete genome

Start: 3085141, End: 3086160, Length: 1020

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:3041294:3075971307597130769901020Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0670
NC_017328:3088907:312484531248453125819975Shigella flexneri 2002017 chromosome, complete genomehypothetical protein0641
NC_013716:5201097:5228535522853552295391005Citrobacter rodentium ICC168, complete genomehypothetical protein5e-178623
NC_016612:2009927:2040967204096720420551089Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein5e-1892.4
NC_016902:4236680:424035742403574241310954Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-1273.9
CP002185:4750571:477155947715594772512954Escherichia coli W, complete genomehypothetical protein2e-1273.9
CP002516:4236680:424035742403574241310954Escherichia coli KO11, complete genomehypothetical protein2e-1273.9
NC_015663:1:2777627776288731098Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-1067.4
NC_015424:3520783:3557553355755335585871035Aeromonas veronii B565 chromosome, complete genomehypothetical protein2e-0653.9