Pre_GI: BLASTP Hits

Some Help

Query: NC_004337:3049118:3081531 Shigella flexneri 2a str. 301, complete genome

Start: 3081531, End: 3082322, Length: 792

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:312123631212363122150915Shigella flexneri 2002017 chromosome, complete genomehypothetical protein9e-147519
NC_004431:279868:283149283149283940792Escherichia coli CFT073, complete genomehypothetical protein6e-145513
NC_008253:3161311:316131131613113162102792Escherichia coli 536, complete genomehypothetical protein2e-144511
NC_014618:4114004:413195241319524132749798Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-83307
NC_010473:247429:268719268719269573855Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted protein2e-0962.8
NC_000913:272071:293169293169294023855Escherichia coli K12, complete genomeCP4-6 prophage; predicted protein2e-0962.8
AC_000091:273325:293169293169294023855Escherichia coli W3110 DNA, complete genomehypothetical protein2e-0962.8