Pre_GI: BLASTP Hits

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Query: NC_004129:5846415:5853098 Pseudomonas fluorescens Pf-5, complete genome

Start: 5853098, End: 5853817, Length: 720

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:1564229:156707215670721567533462Azotobacter vinelandii CA6, complete genometranscriptional activator RfaH1e-37156
NC_012560:1564500:156705915670591567520462Azotobacter vinelandii DJ, complete genometranscriptional activator RfaH1e-37156
NC_018691:1822731:182592618259261826393468Alcanivorax dieselolei B5 chromosome, complete genometranscriptional activator RfaH2e-29129
NC_012559:2663747:270735427073542707872519Laribacter hongkongensis HLHK9, complete genomeRfaH4e-27121
NC_014532:1481787:148850814885081489050543Halomonas elongata DSM 2581, complete genomeK05785 transcriptional antiterminator RfaH4e-25115
NC_019902:27574:458834588346371489Thioalkalivibrio nitratireducens DSM 14787, complete genomeTranscriptional activator RfaH2e-22106
NC_007954:3171081:320585032058503206350501Shewanella denitrificans OS217, complete genometranscriptional activator RfaH6e-2097.4
NC_008700:2701500:273069327306932731196504Shewanella amazonensis SB2B, complete genometranscriptional activator rfaH, putative3e-1995.5
NC_017506:2504746:253812125381212538501381Marinobacter adhaerens HP15 chromosome, complete genometranscriptional activator RfaH9e-1994
NC_005773:1135374:116149511614951162073579Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional activator RfaH1e-1893.6
NC_009052:3381943:340800234080023408508507Shewanella baltica OS155, complete genomeNusG antitermination factor1e-1893.2
NC_011663:1709003:171310317131031713609507Shewanella baltica OS223 chromosome, complete genometranscriptional acivator RfaH3e-1892
NC_009665:3460906:348608834860883486594507Shewanella baltica OS185 chromosome, complete genometranscriptional acivator RfaH3e-1892
NC_009092:1599526:160845316084531608980528Shewanella loihica PV-4, complete genomeNusG antitermination factor1e-1790.1
NC_008322:1595500:159756415975641598064501Shewanella sp. MR-7, complete genomeNusG antitermination factor2e-1686.3
NC_014541:1165991:117021011702101170701492Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional acivator RfaH4e-1685.1
NC_008577:1579950:158776915877691588269501Shewanella sp. ANA-3 chromosome 1, complete sequenceNusG antitermination factor6e-1684.3
NC_016026:997225:100262410026241003127504Micavibrio aeruginosavorus ARL-13 chromosome, complete genometranscription termination factor nusG family protein2e-1479
NC_011566:1597751:159965015996501600174525Shewanella piezotolerans WP3, complete genomeTranscriptional activator RfaH2e-1479
NC_014305:126029:140112140112140666555Erwinia billingiae Eb661 plasmid pEB170, complete sequenceTranscriptional activator2e-1272.8
NC_008781:3365468:339717433971743397728555Polaromonas naphthalenivorans CJ2, complete genomeNusG antitermination factor4e-1168.6
NC_010424:1778459:179698617969861797507522Candidatus Desulforudis audaxviator MP104C, complete genomeNusG antitermination factor1e-1067
NC_014664:493900:500623500623501141519Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeNusG antitermination factor5e-1064.7
NC_013440:5509790:552100255210025521571570Haliangium ochraceum DSM 14365, complete genomeNusG antitermination factor1e-0963.2
NC_014041:558000:563449563449563943495Zunongwangia profunda SM-A87 chromosome, complete genomeNusG antitermination factor2e-0962.8
NC_019673:8763773:878994987899498790863915Saccharothrix espanaensis DSM 44229 complete genomeTranscription antitermination protein4e-0755.1