Pre_GI: BLASTP Hits

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Query: NC_004129:5781413:5788815 Pseudomonas fluorescens Pf-5, complete genome

Start: 5788815, End: 5789696, Length: 882

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:530397:544899544899545777879Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein2e-94345
NC_020211:4484817:450156945015694502465897Serratia marcescens WW4, complete genomehypothetical protein9e-60230
NC_015566:4662171:466217146621714663067897Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-59229
NC_014837:3633378:364755636475563648410855Pantoea sp. At-9b chromosome, complete genomehypothetical protein9e-56217
NC_013790:406681:418820418820419476657Methanobrevibacter ruminantium M1 chromosome, complete genomehypothetical protein4e-0858.9
NC_013194:4034854:403526140352614035992732Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein9e-0651.2