Pre_GI: BLASTP Hits

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Query: NC_004129:5781413:5788190 Pseudomonas fluorescens Pf-5, complete genome

Start: 5788190, End: 5788828, Length: 639

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:530397:544310544310544909600Pseudomonas fluorescens F113 chromosome, complete genomeDNA-binding protein2e-66251
NC_014837:3633378:364844236484423649053612Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator5e-39160
NC_020211:4484817:450095445009544501568615Serratia marcescens WW4, complete genomeXRE family transcriptional regulator8e-36150