Pre_GI: BLASTP Hits

Some Help

Query: NC_004129:4093610:4099630 Pseudomonas fluorescens Pf-5, complete genome

Start: 4099630, End: 4100520, Length: 891

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017150:1406793:142338814233881424269882Acetobacter pasteurianus IFO 3283-01-42C, complete genometranscriptional regulator GntR1e-85316
NC_013209:1406793:142338814233881424269882Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator GntR1e-85316
NC_017100:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-03, complete genometranscriptional regulator GntR1e-85316
NC_017108:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-12, complete genometranscriptional regulator GntR1e-85316
NC_017111:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-32, complete genometranscriptional regulator GntR1e-85316
NC_017121:1406787:142338214233821424263882Acetobacter pasteurianus IFO 3283-07, complete genometranscriptional regulator GntR1e-85316
NC_017125:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-22, complete genometranscriptional regulator GntR1e-85316
NC_017146:1407804:142439914243991425280882Acetobacter pasteurianus IFO 3283-26, complete genometranscriptional regulator GntR1e-85316
NC_009952:592000:596939596939597799861Dinoroseobacter shibae DFL 12, complete genomeamidohydrolase family protein1e-64246
NC_004129:4093610:4101896410189641035061611Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family/amidohydrolase family protein5e-60231
NC_008061:2773670:277856527785652779497933Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceamidohydrolase 24e-50198
NC_008543:2474002:248751024875102488442933Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceamidohydrolase 24e-50198
NC_010515:1900967:190586219058621906794933Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceamidohydrolase 22e-49196
NC_015733:1976752:199438519943851995278894Pseudomonas putida S16 chromosome, complete genomehypothetical protein2e-47189
NC_009512:1518113:153418715341871535050864Pseudomonas putida F1, complete genomeamidohydrolase 21e-42173
NC_015458:3390674:339681333968133397694882Pusillimonas sp. T7-7 chromosome, complete genomeamidohydrolase 21e-42173
NC_014539:743523:748293748293749216924Burkholderia sp. CCGE1003 chromosome 1, complete sequenceamidohydrolase 29e-42170
NC_010511:871905:886292886292887188897Methylobacterium sp. 4-46 chromosome, complete genomeamidohydrolase 26e-39161
NC_011892:352652:362752362752363594843Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeamidohydrolase 22e-37156
NC_007963:2777066:278181927818192782682864Chromohalobacter salexigens DSM 3043, complete genomeamidohydrolase 22e-33142
NC_007492:3180480:322305532230553223909855Pseudomonas fluorescens PfO-1, complete genomeAmidohydrolase 24e-33141
NC_007434:1923000:1945799194579919469051107Burkholderia pseudomallei 1710b chromosome I, complete sequencehydrolase2e-32140
NC_007651:3064530:306586430658643066790927Burkholderia thailandensis E264 chromosome I, complete sequencehydrolase9e-33140
NC_009074:1555500:156911215691121570086975Burkholderia pseudomallei 668 chromosome I, complete sequencehydrolase2e-32139
NC_009076:1566500:157881215788121579795984Burkholderia pseudomallei 1106a chromosome I, complete sequenceamidohydrolase family protein2e-32139
NC_006350:2427000:243005424300542431037984Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative hydrolase2e-32139
NC_011740:3739395:374593937459393746757819Escherichia fergusonii ATCC 35469, complete genomeputative hydrolase9e-30130
NC_010617:774914:825343825343826125783Kocuria rhizophila DC2201, complete genomeputative hydrolase3e-1892.8
NC_009664:4423829:451546045154604516224765Kineococcus radiotolerans SRS30216, complete genomeamidohydrolase 27e-1684.7
NC_015976:2064387:208670220867022087541840Sphingobium sp. SYK-6, complete genomeputative hydrolase1e-0654.3