Pre_GI: BLASTP Hits

Some Help

Query: NC_004129:3452885:3459381 Pseudomonas fluorescens Pf-5, complete genome

Start: 3459381, End: 3460526, Length: 1146

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:2331617:2349429234942923505741146Pseudomonas entomophila L48, complete genomehypothetical protein0716
NC_004547:2470978:2474317247431724754621146Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-133474
NC_013173:1356526:1390066139006613911961131Desulfomicrobium baculatum DSM 4028, complete genomemetal dependent phosphohydrolase3e-56219
NC_012691:1743038:1767843176784317690841242Tolumonas auensis DSM 9187, complete genomepolyA polymerase related protein4e-21102
NC_017192:497950:5110945110945124911398Arcobacter sp. L, complete genometRNA nucleotidyltransferase/poly(A) polymerase5e-1582.4
NC_016048:2167440:217938221793822180137756Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-0861.2
NC_013173:1356526:1387166138716613885451380Desulfomicrobium baculatum DSM 4028, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase2e-0860.8
NC_014624:828943:828943828943829572630Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein6e-0858.9