Pre_GI: BLASTP Hits

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Query: NC_003888:7659639:7685784 Streptomyces coelicolor A3(2), complete genome

Start: 7685784, End: 7686425, Length: 642

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018750:6132619:614478761447876145470684Streptomyces venezuelae ATCC 10712, complete genomeTranscription factor WhiB1e-39162
NC_016111:2932495:293989729398972940463567Streptomyces cattleya NRRL 8057, complete genomeprophage protein2e-31135
NC_008578:591357:592846592846593097252Acidothermus cellulolyticus 11B, complete genometranscription factor WhiB1e-0756.6
NC_010612:4837346:484750748475074848031525Mycobacterium marinum M, complete genometranscriptional regulatory protein5e-0754.3
NC_016582:389729:399175399175399405231Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscription factor WhiB6e-0754.3
NC_009664:452195:462269462269462511243Kineococcus radiotolerans SRS30216, complete genometranscription factor WhiB8e-0753.9
NC_013595:9149273:916781091678109168064255Streptosporangium roseum DSM 43021, complete genometranscription factor WhiB7e-0753.9
NC_008271:35909:621056210562461357Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transcriptional regulator, WhiB family1e-0653.5
NC_019673:8348604:837424483742448374498255Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0652.4
NC_012522:4299287:432405743240574324779723Rhodococcus opacus B4, complete genomeputative WhiB family regulatory protein3e-0652
NC_008699:1816392:181793418179341818185252Nocardioides sp. JS614, complete genometranscription factor WhiB3e-0652
NC_018750:6070260:607882760788276079129303Streptomyces venezuelae ATCC 10712, complete genomeWhiB-type transcription regulator3e-0652
NC_015656:4879904:490103349010334901413381Frankia symbiont of Datisca glomerata chromosome, complete genometranscription factor WhiB5e-0651.2