Pre_GI: BLASTP Hits

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Query: NC_003888:6568000:6584624 Streptomyces coelicolor A3(2), complete genome

Start: 6584624, End: 6586033, Length: 1410

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013172:2647716:2655291265529126567451455Brachybacterium faecium DSM 4810, complete genomeABC-type sugar transport system, periplasmic component5e-92338
NC_016582:4073850:4082945408294540843781434Streptomyces bingchenggensis BCW-1 chromosome, complete genomeABC transporter substrate-binding protein2e-58226
NC_013929:2375613:2386546238654623880181473Streptomyces scabiei 87.22 chromosome, complete genomeextracellular solute-binding receptor2e-57224
NC_018750:6315802:6327981632798163294261446Streptomyces venezuelae ATCC 10712, complete genomeSugar ABC transporter sugar-binding protein4e-56219
NC_016114:1435436:1448387144838714498351449Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeABC transporter substrate-binding protein2e-55216
NC_021177:6662668:6671420667142066728651446Streptomyces fulvissimus DSM 40593, complete genomeABC transporter solute-binding protein5e-55215
NC_010572:1748668:1757719175771917591701452Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter solute-binding protein5e-54212
NC_015953:5908467:5917430591743059188781449Streptomyces sp. SirexAA-E chromosome, complete genomefamily 1 extracellular solute-binding protein1e-52207
NC_016109:2938000:2945031294503129464221392Kitasatospora setae KM-6054, complete genomechitobiose ABC transporter substrate-binding protein2e-52206
NC_003155:2730469:2739559273955927410161458Streptomyces avermitilis MA-4680, complete genomeABC transporter solute-binding protein1e-50201
NC_013406:7024149:7041275704127570427501476Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-0963.9
NC_007435:1446916:1485572148557214868131242Burkholderia pseudomallei 1710b chromosome II, complete sequenceABC transporter, substrate-binding protein3e-0653.9
NC_009078:2718741:2757397275739727585961200Burkholderia pseudomallei 1106a chromosome II, complete sequenceABC transporter, carbohydrate uptake transporter-1 (CUT1) family, periplasmic carbohydrate-binding protein3e-0653.9