Pre_GI: BLASTP Hits

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Query: NC_003888:5790104:5809171 Streptomyces coelicolor A3(2), complete genome

Start: 5809171, End: 5809434, Length: 264

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009921:6421387:642366664236666424214549Frankia sp. EAN1pec, complete genomemetal dependent phosphohydrolase3e-21100
NC_009142:7820251:782507978250797825630552Saccharopolyspora erythraea NRRL 2338, complete genomemetal dependent phosphohydrolase1e-1582
NC_017186:361444:386384386384386956573Amycolatopsis mediterranei S699 chromosome, complete genomemetal dependent phosphohydrolase1e-1581.6
NC_015656:4367764:436821843682184368790573Frankia symbiont of Datisca glomerata chromosome, complete genomemetal dependent phophohydrolase3e-1167
NC_006361:792904:799799799799800362564Nocardia farcinica IFM 10152, complete genomehypothetical protein7e-1165.9
NC_015434:6020178:603158360315836032137555Verrucosispora maris AB-18-032 chromosome, complete genomemetal dependent phosphohydrolase9e-1165.5
NC_010612:3813481:381478338147833815319537Mycobacterium marinum M, complete genomeconserved hypothetical hydrolase5e-0959.7
NC_009077:3323291:333655833365583337094537Mycobacterium sp. JLS, complete genomemetal dependent phosphohydrolase2e-0857.8
NC_008705:3377697:339096433909643391500537Mycobacterium sp. KMS, complete genomemetal dependent phosphohydrolase2e-0857.8
NC_008146:3349415:336268233626823363149468Mycobacterium sp. MCS, complete genomemetal dependent phosphohydrolase2e-0857.8
NC_008595:3914463:392820839282083928666459Mycobacterium avium 104, complete genomemetal dependent phosphohydrolase3e-0857.4
NC_013510:5499447:550609655060965506644549Thermomonospora curvata DSM 43183, complete genomemetal dependent phosphohydrolase5e-0856.6
NC_013131:10370765:103775981037759810378158561Catenulispora acidiphila DSM 44928, complete genomemetal dependent phosphohydrolase6e-0856.2
NC_016114:3439273:345287434528743453437564Streptomyces flavogriseus ATCC 33331 chromosome, complete genomemetal dependent phosphohydrolase1e-0651.6
NC_016947:2380500:243737724373772437598222Mycobacterium intracellulare MOTT-02 chromosome, complete genomemetal dependent phosphohydrolase1e-0651.6
NC_018750:2696000:270383027038302704408579Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-0651.6
NC_009339:201897:215326215326215880555Mycobacterium gilvum PYR-GCK plasmid pMFLV01, complete sequencemetal dependent phosphohydrolase2e-0651.2
NC_013595:9547254:956403995640399564626588Streptosporangium roseum DSM 43021, complete genomehypothetical protein7e-0649.3