Pre_GI: BLASTP Hits

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Query: NC_003888:56225:78983 Streptomyces coelicolor A3(2), complete genome

Start: 78983, End: 79702, Length: 720

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008726:494769:502131502131503012882Mycobacterium vanbaalenii PYR-1, complete genomehypothetical protein5e-25114
NC_008726:610000:6138536138536156461794Mycobacterium vanbaalenii PYR-1, complete genomeIntegrase, catalytic region4e-22105
NC_014814:4809607:482799248279924828741750Mycobacterium sp. Spyr1 chromosome, complete genome2e-1996.3
NC_003155:4592000:4623466462346646252351770Streptomyces avermitilis MA-4680, complete genomeISmav2-like transposase2e-1376.3
NC_013929:5248000:5257558525755852593241767Streptomyces scabiei 87.22 chromosome, complete genomeintegrase3e-0962
NC_009953:1799416:1819016181901618201171102Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein4e-0858.5
NC_015514:3877810:3884810388481038858561047Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit4e-0652