Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2850510 Streptomyces coelicolor A3(2), complete genome

Start: 2850510, End: 2851697, Length: 1188

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6663889:6667381666738166685561176Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein phosphatase8e-167586
NC_016114:4922630:4923950492395049251131164Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeSer/Thr phosphatase9e-159560
NC_021177:2451000:2467664246766424688091146Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein1e-150532
NC_014210:4053094:4073747407374740748501104Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein serine/threonine phosphatase3e-50199
NC_013131:8480384:8485007848500784863141308Catenulispora acidiphila DSM 44928, complete genomeprotein serine/threonine phosphatase4e-44179
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein3e-0963.2
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit2e-0860.8
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase2e-0860.5
NC_018750:3859127:3872413387241338745302118Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein4e-0859.3
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase2e-0757.4
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase2e-0757
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein3e-0756.6
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein4e-0756.2
NC_015656:4879904:4895368489536848964921125Frankia symbiont of Datisca glomerata chromosome, complete genomeprotein serine/threonine phosphatase6e-0755.8
NC_015671:3211972:3231317323131732335992283Cellvibrio gilvus ATCC 13127 chromosome, complete genomeputative PAS/PAC sensor protein2e-0653.5
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein5e-0652.8