Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2848812 Streptomyces coelicolor A3(2), complete genome

Start: 2848812, End: 2849981, Length: 1170

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6663889:6669394666939466705151122Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-99362
NC_021177:2451000:2464367246436724655271161Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein1e-97356
NC_016114:4922630:4927125492712549283181194Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeacyltransferase3e-96352
NC_013947:5682895:5688329568832956895281200Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeacyltransferase 31e-47190
NC_014210:4188448:4207532420753242086531122Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,acyltransferase 35e-41169
NC_013406:6494079:6520374652037465214201047Paenibacillus sp. Y412MC10 chromosome, complete genomeacyltransferase 33e-31136
NC_013174:2013000:2026338202633820274531116Jonesia denitrificans DSM 20603, complete genomeacyltransferase 32e-27123
NC_010556:462500:463693463693464562870Exiguobacterium sibiricum 255-15, complete genomeacyltransferase 32e-1687
NC_018665:422451:423580423580424449870Exiguobacterium antarcticum B7 chromosome, complete genomeAcyltransferase 32e-1584
NC_009436:1466580:147231614723161473314999Enterobacter sp. 638, complete genomeacyltransferase5e-1582.4
NC_008261:1249595:1266078126607812671211044Clostridium perfringens ATCC 13124, complete genomeacyltransferase family protein3e-1273.2