Pre_GI: BLASTP Hits

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Query: NC_003366:1427785:1438156 Clostridium perfringens str. 13, complete genome

Start: 1438156, End: 1438854, Length: 699

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010674:2856997:287507928750792875768690Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein5e-116416
NC_014972:1923035:192633019263301927019690Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein2e-113408
NC_011898:351792:373484373484374176693Clostridium cellulolyticum H10, complete genomeNifU-like domain-containing protein8e-108389
NC_015737:981712:984143984143984835693Clostridium sp. SY8519, complete genomehypothetical protein3e-102370
NC_012781:1968827:199452719945271995228702Eubacterium rectale ATCC 33656, complete genomehypothetical protein3e-100364
NC_015389:1298689:133000713300071330741735Coriobacterium glomerans PW2 chromosome, complete genomeNifU-like domain-containing protein2e-98358
NC_014363:427393:454442454442455134693Olsenella uli DSM 7084 chromosome, complete genomeNifU-like domain-containing protein3e-97354
NC_010337:1188373:120154512015451202204660Heliobacterium modesticaldum Ice1, complete genomehypothetical protein2e-87322