Pre_GI: BLASTP Hits

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Query: NC_003308:1:26092 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 26092, End: 27243, Length: 1152

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:5949559495605771083Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceopine dehydrogenase0667
NC_008209:253663:2735282735282746341107Roseobacter denitrificans OCh 114, complete genomedehydrogenase, putative2e-89329
NC_014377:210888:2255102255102266431134Thermosediminibacter oceani DSM 16646 chromosome, complete genomeNAD/NADP octopine/nopaline dehydrogenase1e-24114
NC_014011:1264165:1272539127253912736181080Aminobacterium colombiense DSM 12261 chromosome, complete genomeNAD/NADP octopine/nopaline dehydrogenase5e-22105
NC_006177:280234:2823412823412834351095Symbiobacterium thermophilum IAM 14863, complete genomeNAD/NADP octopine/nopaline dehydrogenase7e-1788.6
NC_009615:487173:4984664984664995421077Parabacteroides distasonis ATCC 8503 chromosome, complete genomeNAD/NADP octopine/nopaline dehydrogenase8e-1685.1
NC_014960:115614:1167441167441178531110Anaerolinea thermophila UNI-1, complete genomeputative opine dehydrogenase2e-1584
NC_006361:2225072:2226112222611222272121101Nocardia farcinica IFM 10152, complete genomeputative dehydrogenase5e-0858.9
NC_008391:2404443:2404443240444324055491107Burkholderia cepacia AMMD chromosome 2, complete sequenceNAD/NADP octopine/nopaline dehydrogenase2e-0757.4