Pre_GI: BLASTP Hits

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Query: NC_003306:22228:45460 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 45460, End: 46200, Length: 741

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:457674576746507741Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein2e-142504
NC_015730:1799500:179982917998291800485657Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein7e-39160
NC_014834:2206119:225655822565582257397840Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein9e-39160
NC_008782:3110744:311808631180863118799714Acidovorax sp. JS42, complete genomehypothetical protein2e-38159
NC_010170:4800000:489575548957554896450696Bordetella petrii, complete genomehypothetical protein7e-38157
NC_015976:2900891:290901229090122909683672Sphingobium sp. SYK-6, complete genomehypothetical protein3e-37155
NC_009720:870194:873665873665874342678Xanthobacter autotrophicus Py2, complete genomehypothetical protein4e-37154
NC_008435:4530797:454048145404814541101621Rhodopseudomonas palustris BisA53, complete genomehypothetical protein3e-1582.4
NC_013164:67500:782177821778828612Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequencehypothetical protein1e-1170.1
NC_015850:736680:754833754833755453621Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein2e-1066.2
NC_011901:1860887:189075518907551891363609Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein1e-0963.9
NC_014033:1301154:130670613067061307311606Prevotella ruminicola 23 chromosome, complete genomehypothetical protein4e-0962
NC_012912:483390:499921499921500532612Dickeya zeae Ech1591, complete genomehypothetical protein3e-0755.8
NC_011992:1381843:138861913886191389215597Acidovorax ebreus TPSY, complete genomehypothetical protein3e-0755.5
NC_015381:2859000:286639528663952866991597Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein5e-0754.7
NC_008942:875060:877315877315877920606Methanocorpusculum labreanum Z, complete genomehypothetical protein7e-0754.3
NC_015152:272500:275003275003275635633Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein2e-0653.1