Pre_GI: BLASTP Hits

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Query: NC_003306:22228:35541 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 35541, End: 36428, Length: 888

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:358393583936735897Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein3e-172603
NC_017323:1644000:168374316837431684660918Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencehypothetical protein2e-56219
NC_007963:3225306:323394432339443234768825Chromohalobacter salexigens DSM 3043, complete genomehypothetical protein5e-1272
NC_014394:1989418:199904719990471999850804Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein3e-1169.3
NC_004663:44647:781097810978975867Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein6e-1168.6
NC_018868:2935580:294709129470912947933843Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein4e-1065.9
NC_019940:203718:211664211664212593930Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein2e-0859.7