Pre_GI: BLASTP Hits

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Query: NC_003305:693810:700907 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 700907, End: 701233, Length: 327

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020995:789665:805428805428806018591Enterococcus casseliflavus EC20, complete genomehypothetical protein6e-24109
NC_008062:81338:886078860789173567Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceprotein of unknown function DUF9252e-1374.3
NC_008544:55451:664266642666992567Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceprotein of unknown function DUF9252e-1374.3
NC_020209:2838582:284873728487372849291555Pseudomonas poae RE*1-1-14, complete genomehypothetical protein4e-1270.1
NC_008027:3953951:395936339593633959923561Pseudomonas entomophila L48, complete genomehypothetical protein2e-0961.2
NC_016593:2447938:246804624680462468627582Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein3e-0960.5
NC_009512:3118907:312610831261083126623516Pseudomonas putida F1, complete genomeprotein of unknown function DUF9254e-0960.1
NC_020210:2969862:298083229808322981413582Geobacillus sp. GHH01, complete genomehypothetical protein4e-0960.1
NC_017986:5421000:542952154295215430105585Pseudomonas putida ND6 chromosome, complete genomehypothetical protein4e-0960.1
NC_007645:2049988:206306220630622063520459Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-0858.5