Pre_GI: BLASTP Hits

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Query: NC_003305:1035342:1035342 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1035342, End: 1036142, Length: 801

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1019674:103847910384791039414936Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-157554
NC_014924:2399524:243085324308532431632780Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeN-formylglutamate amidohydrolase5e-68257
NC_006677:1255079:127186312718631272678816Gluconobacter oxydans 621H, complete genomeN-formylglutamate deformylase8e-64243
NC_010694:2492378:250507625050762505870795Erwinia tasmaniensis, complete genomePutative N-formylglutamate amidohydrolase5e-53207
NC_010125:3067301:306991730699173070798882Gluconacetobacter diazotrophicus PAl 5, complete genomeputative N-formylglutamate amidohydrolase2e-22106
NC_011365:3676500:369139836913983692279882Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeN-formylglutamate amidohydrolase4e-22105
NC_009485:1487485:148874814887481489632885Bradyrhizobium sp. BTAi1 chromosome, complete genomeN-formylglutamate amidohydrolase1e-21103
NC_007626:2354260:235876923587692359716948Magnetospirillum magneticum AMB-1, complete genomeN-formylglutamate amidohydrolase2e-1686.3
NC_015730:3853065:387702138770213877881861Roseobacter litoralis Och 149 chromosome, complete genomeputative N-formylglutamate amidohydrolase2e-1686.3
NC_008781:2655071:267821926782192679064846Polaromonas naphthalenivorans CJ2, complete genomeN-formylglutamate amidohydrolase3e-1685.9
NC_006677:2402282:240689824068982407845948Gluconobacter oxydans 621H, complete genomeN-formylglutamate deformylase8e-1684.3
NC_015976:3118804:313992131399213140823903Sphingobium sp. SYK-6, complete genomeputative N-formylglutamate amidohydrolase5e-1271.6
NC_009952:366959:368291368291369154864Dinoroseobacter shibae DFL 12, complete genomeN-formylglutamate amidohydrolase6e-1271.6
NC_008782:4229306:424928542492854250223939Acidovorax sp. JS42, complete genomeN-formylglutamate amidohydrolase6e-1168.2
NC_014414:167803:169776169776170654879Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein2e-1066.6
NC_011837:3814000:383657238365723837438867Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0962.4
NC_009706:3882500:390512939051293905935807Clostridium kluyveri DSM 555 chromosome, complete genomeamidohydrolase4e-0962
NC_014010:2689682:2706682270668227078481167Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeformiminoglutamase, putative1e-0860.5