Pre_GI: BLASTP Hits

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Query: NC_003197:606048:617984 Salmonella typhimurium LT2, complete genome

Start: 617984, End: 618056, Length: 73

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:644095:65603165603165610373Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-OTHER6e-0649.7
NC_016857:604792:61747261747261754473Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/746e-0649.7
NC_016856:606742:61867861867861875073Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-OTHER6e-0649.7
NC_011083:654479:66641466641466648673Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-OTHER6e-0649.7