Pre_GI: BLASTP Hits

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Query: NC_003064:22535:44158 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 44158, End: 44610, Length: 453

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003306:22228:438964389644303408Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein1e-53207
NC_008358:2638245:267278526727852673138354Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein3e-1167.4
NC_015381:1:959795979944348Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-0961.6
NC_009429:686608:693964693964694332369Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein7e-0856.2
NC_019973:6102442:611858861185886118956369Mesorhizobium australicum WSM2073, complete genomehypothetical protein7e-0649.3
NC_009050:567209:584866584866585189324Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencehypothetical protein1e-0549.3
NC_007494:1:909390939416324Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencehypothetical protein1e-0549.3