Pre_GI: BLASTP Hits

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Query: NC_003064:22535:31765 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 31765, End: 32883, Length: 1119

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003306:22228:3145831458324771020Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein0660
NC_014117:132524:1723171723171733421026Burkholderia sp. CCGE1002 chromosome chromosome 1, completehypothetical protein7e-33141
NC_007298:1418500:144482714448271445777951Dechloromonas aromatica RCB, complete genomehypothetical protein1e-1997.8
NC_017506:2993679:3004901300490130068411941Marinobacter adhaerens HP15 chromosome, complete genomeHypX1e-0654.3
NC_010473:1384000:1391119139111913932152097Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein6e-0652.4