Pre_GI: BLASTP Hits

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Query: NC_003063:304962:331789 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 331789, End: 332778, Length: 990

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:1081236:1104013110401311050351023Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein5e-28125
NC_006361:2920028:2920028292002829210681041Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-23110
NC_012914:5618000:5645455564545556464801026Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein1e-20100
NC_009654:4624459:4635671463567146366811011Marinomonas sp. MWYL1, complete genomeNMT1/THI5-like domain-containing protein1e-1894.4
NC_015559:1478114:149684014968401497820981Marinomonas posidonica IVIA-Po-181 chromosome, complete genomehypothetical protein2e-1480.5
NC_008148:3024867:3040211304021130412571047Rubrobacter xylanophilus DSM 9941, complete genomeTwin-arginine translocation pathway signal4e-1375.9
NC_014931:4985500:4997508499750849985421035Variovorax paradoxus EPS chromosome, complete genomeNMT1/THI5 like domain protein2e-1170.1
NC_002678:7004370:7030549703054970315771029Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-1169.3
NC_014171:723155:7477697477697487701002Bacillus thuringiensis BMB171 chromosome, complete genomehydroxymethylpyrimidine-binding protein7e-1168.2
NC_017075:4259460:4279348427934842803911044Rubrivivax gelatinosus IL144, complete genomeNMT1/THI5 like domain-containing protein7e-1168.2
NC_003030:1510000:1543715154371515447161002Clostridium acetobutylicum ATCC 824, complete genomeABC transporter, periplasmic binding component8e-1168.2
NC_017192:1799000:1813625181362518168313207Arcobacter sp. L, complete genometwo-component sensor kinase1e-1067.8
NC_005945:754517:7545177545177555181002Bacillus anthracis str. Sterne, complete genomeABC transporter, substrate-binding protein, putative2e-1067
NC_014829:4565467:456697645669764567959984Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeABC transporter substrate-binding protein4e-0962.8
NC_009663:851143:8714898714898737562268Sulfurovum sp. NBC37-1, complete genomesignal transduction response regulator5e-0858.9
NC_014166:2149984:2171101217110121744753375Arcobacter nitrofigilis DSM 7299 chromosome, complete genomePAS/PAC sensor-containg diguanylate cyclase1e-0757.4
NC_015276:1531159:1537840153784015388501011Marinomonas mediterranea MMB-1 chromosome, complete genomeNMT1/THI5-like domain-containing protein5e-0755.5
NC_006138:656000:661717661717662688972Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-0653.1
NC_020908:1920169:194223819422381943173936Octadecabacter arcticus 238, complete genomeNMT1/Thi5 family protein6e-0652
NC_007645:2049988:2049988204998820529873000Hahella chejuensis KCTC 2396, complete genomepredicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain8e-0651.6
NC_013515:550464:553847553847554809963Streptobacillus moniliformis DSM 12112, complete genomeNMT1/THI5 like domain protein9e-0651.2
NC_017192:1745114:1767625176762517705822958Arcobacter sp. L, complete genometwo-component sensor kinase1e-0551.2