Pre_GI: BLASTP Hits

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Query: NC_003063:2059311:2065420 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2065420, End: 2065824, Length: 405

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1:893289329336405Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein6e-64242
NC_011901:3363500:337051533705153370919405Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein9e-36148
NC_009925:1003000:101297410129741013351378Acaryochloris marina MBIC11017, complete genomehypothetical protein1e-31134
NC_014315:2711852:271408127140812714470390Nitrosococcus watsoni C-113 chromosome, complete genomehypothetical protein2e-29127
NC_015221:12389:231532315323539387Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence3e-1993.6