Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1371855 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1371855, End: 1372721, Length: 867

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:693810:702035702035702901867Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-167588
NC_017082:6321124:633730563373056338126822Bradyrhizobium sp. S23321, complete genomeputative dienelactone hydrolase family protein3e-30132
NC_010505:4820000:4857834485783448588411008Methylobacterium radiotolerans JCM 2831, complete genomedienelactone hydrolase6e-1788.2
NC_016745:2229271:223625422362542237051798Oceanimonas sp. GK1 chromosome, complete genomedienelactone hydrolase8e-1167.8
NC_007759:512477:512477512477513358882Syntrophus aciditrophicus SB, complete genomedienelactone hydrolase family protein1e-0963.9
NC_009380:4944183:495015349501534950923771Salinispora tropica CNB-440 chromosome, complete genomedienelactone hydrolase4e-0962.4
NC_012912:4428111:445124244512424452069828Dickeya zeae Ech1591, complete genomeCarboxymethylenebutenolidase2e-0860.1
NC_013592:1602242:162231416223141623210897Dickeya dadantii Ech586, complete genomepeptidase S152e-0859.7
NC_021177:2309615:231507323150732315840768Streptomyces fulvissimus DSM 40593, complete genomeDienelactone hydrolase-related enzyme6e-0858.5
NC_007434:788500:8055278055278065971071Burkholderia pseudomallei 1710b chromosome I, complete sequencedienelactone hydrolase family protein7e-0858.2
NC_013421:4714478:477210447721044772931828Pectobacterium wasabiae WPP163, complete genomeCarboxymethylenebutenolidase9e-0857.8
NC_017026:2286000:230644623064462307159714Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein1e-0757.4
NC_016804:2254979:227614222761422276855714Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein1e-0757.4
NC_009565:2306574:232773723277372328450714Mycobacterium tuberculosis F11, complete genomehypothetical protein1e-0757.4
NC_006350:595893:640045640045640776732Burkholderia pseudomallei K96243 chromosome 1, complete sequencedienelactone hydrolase family protein2e-0756.6
NC_016114:7116141:712538371253837126108726Streptomyces flavogriseus ATCC 33331 chromosome, complete genomedienelactone hydrolase4e-0755.5