Pre_GI: BLASTP Hits

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Query: NC_003062:50756:70987 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 70987, End: 71385, Length: 399

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:711887118871586399Agrobacterium tumefaciens str. C58 chromosome circular, completeribonucleotide reductase stimulatory protein2e-51200
NC_015183:51500:715857158571911327Agrobacterium sp. H13-3 chromosome, complete genomeribonucleotide reductase stimulatory protein2e-42170
NC_010694:1052722:105484510548451055255411Erwinia tasmaniensis, complete genomeProtein NrdI3e-29126
NC_013364:3339768:336457833645783364988411Escherichia coli O111:H- str. 11128, complete genomeNrdI protein2e-28124
NC_012759:2633949:268479926847992685209411Escherichia coli BW2952 chromosome, complete genomeribonucleotide reductase stimulatory protein2e-28124
AC_000091:2747520:279962127996212800031411Escherichia coli W3110 DNA, complete genomeprotein that stimulates ribonucleotide reduction2e-28124
NC_000913:2746886:279898727989872799397411Escherichia coli K12, complete genomehypothetical protein2e-28124
NC_009381:1783886:181551218155121815994483Yersinia pestis Pestoides F chromosome, complete genomeribonucleotide reductase stimulatory protein8e-28122
NC_012669:96966:102268102268102684417Beutenbergia cavernae DSM 12333, complete genomeNrdI protein3e-27120
NC_015588:2468207:248349224834922483923432Isoptericola variabilis 225 chromosome, complete genomeProtein nrdI7e-27119
NC_015671:3211972:322351532235153223931417Cellvibrio gilvus ATCC 13127 chromosome, complete genomeNrdI protein1e-26118
NC_015514:3911655:392304039230403923456417Cellulomonas fimi ATCC 484 chromosome, complete genomeNrdI protein2e-26117
NC_011886:2369980:238241723824172382887471Arthrobacter chlorophenolicus A6, complete genomeNrdI protein3e-26116
NC_014151:449732:476677476677477093417Cellulomonas flavigena DSM 20109 chromosome, complete genomeNrdI protein1e-25115
NC_016642:2440070:246505024650502465454405Pseudovibrio sp. FO-BEG1 chromosome, complete genomeRibonucleotide reductase Class Ib, NrdI6e-25112
NC_014550:3316115:336187333618733362361489Arthrobacter arilaitensis Re117, complete genomeputative FMN reductase5e-23106
NC_010617:55493:677596775968145387Kocuria rhizophila DC2201, complete genomeputative NrdI protein2e-22103
NC_012803:1117875:112939711293971129864468Micrococcus luteus NCTC 2665, complete genomeribonucleoside-diphosphate reductase 2, operon protein nrdI8e-22102
NC_013172:3141739:315691331569133157422510Brachybacterium faecium DSM 4810, complete genomeribonucleoside-diphosphate reductase 2, operon protein nrdI3e-21100
NC_004344:672550:696950696950697375426Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein4e-2096.7
NC_010545:1729161:173141117314111731845435Corynebacterium urealyticum DSM 7109, complete genomeNrdI protein involved in ribonucleotide reduction8e-2095.5
NC_014448:803106:818415818415818876462Mycoplasma hyorhinis HUB-1 chromosome, complete genomeribonucleotide reductase stimulatory protein8e-2095.5
NC_016932:1791868:180482018048201805257438Corynebacterium pseudotuberculosis 316 chromosome, complete genomeprotein nrdI1e-1891.3
NC_014246:676570:701579701579701890312Mobiluncus curtisii ATCC 43063 chromosome, complete genomeputative ribonucleotide reductase1e-1788.2
NC_011134:533679:548925548925549335411Streptococcus equi subsp. zooepidemicus str. MGCS10565, completeribonucleotide reduction protein NrdI2e-1787.8
NC_014550:2013422:202682020268202027305486Arthrobacter arilaitensis Re117, complete genomeNrdI protein5e-1786.3
NC_016893:694587:718438718438718863426Wigglesworthia glossinidia endosymbiont of Glossina morsitansNrdI family ribonucleotide reduction protein8e-1785.5
NC_012470:1635516:164367616436761644083408Streptococcus equi subsp. zooepidemicus, complete genomeribonucleotide reductase protein1e-1685.1