Pre_GI: BLASTP Hits

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Query: NC_003062:50756:50756 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 50756, End: 51331, Length: 576

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:510485104851533486Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein7e-83306
NC_015183:51500:515545155452039486Agrobacterium sp. H13-3 chromosome, complete genomehypothetical protein6e-81299
NC_015684:362236:388935388935389423489Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein1e-28125
NC_011386:136223:139286139286139774489Oligotropha carboxidovorans OM5, complete genomehypothetical protein1e-28125
NC_016622:527688:547735547735548226492Azospirillum lipoferum 4B, complete genomehypothetical protein1e-22105
NC_015580:3834244:385171538517153852215501Novosphingobium sp. PP1Y, complete genomehypothetical protein1e-1479.7