Pre_GI: BLASTP Hits

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Query: NC_001264:28266:47626 Deinococcus radiodurans R1 chromosome 2, complete sequence

Start: 47626, End: 48174, Length: 549

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014212:2776457:279761227976122798142531Meiothermus silvanus DSM 9946 chromosome, complete genomedTDP-4-dehydrorhamnose 35-epimerase related protein2e-54211
NC_013946:2050871:206956820695682069981414Meiothermus ruber DSM 1279 chromosome, complete genomedTDP-4-dehydrorhamnose 3 5-epimerase2e-47187
NC_014098:850000:856903856903857469567Bacillus tusciae DSM 2912 chromosome, complete genomeputative dTDP-4-dehydrorhamnose 3,5-epimerase6e-22103
NC_009725:3602632:361386036138603614321462Bacillus amyloliquefaciens FZB42, complete genomeSpsL1e-1686.3
NC_007644:161222:166469166469166924456Moorella thermoacetica ATCC 39073, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase related1e-1479.3
NC_009464:2523092:254917725491772549650474Uncultured methanogenic archaeon RC-I, complete genomedTDP-4-dehydrorhamnose 3,5 epimerase2e-1272
NC_009051:165102:167803167803168279477Methanoculleus marisnigri JR1, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase1e-1169.3
NC_010525:421769:432183432183432746564Thermoproteus neutrophilus V24Sta, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase3e-1064.7
NC_015931:618445:629462629462630025564Pyrolobus fumarii 1A, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase4e-1064.3
NC_011832:2527183:254524125452412545717477Candidatus Methanosphaerula palustris E1-9c, complete genomedTDP-4-dehydrorhamnose 3,5 epimerase1e-0962.8
NC_009712:1822375:183117618311761831751576Candidatus Methanoregula boonei 6A8, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase3e-0857.8
NC_013967:1878045:190545019054501905920471Haloferax volcanii DS2 chromosome, complete genomespore coat polysaccharide synthesis spsK5e-0857.4
NC_015738:978794:101415910141591014743585Eggerthella sp. YY7918, complete genomehypothetical protein8e-0856.6
NC_015320:470988:475353475353475850498Archaeoglobus veneficus SNP6 chromosome, complete genomeCupin 2 barrel domain-containing protein8e-0856.6
NC_014735:199434:206435206435206905471Halogeometricum borinquense DSM 11551 plasmid pHBOR01, completedTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme8e-0856.6
NC_015955:581685:596565596565597035471Halophilic archaeon DL31 plasmid phalar01, complete sequencespore coat polysaccharide synthesis SpsK1e-0755.8
NC_013158:2170083:218840021884002188867468Halorhabdus utahensis DSM 12940, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase1e-0755.8
NC_013204:2371499:239379623937962394368573Eggerthella lenta DSM 2243, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase1e-0652.4
NC_007503:861668:864609864609865085477Carboxydothermus hydrogenoformans Z-2901, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase1e-0652.4
NC_006834:787500:809683809683810240558Xanthomonas oryzae pv. oryzae KACC10331, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase3e-0651.6
NC_003902:714478:745628745628746185558Xanthomonas campestris pv. campestris str. ATCC 33913, completedTDP-4-dehydrorhamnose 3,5-epimerase3e-0651.2
NC_007086:4293405:429285142928514293408558Xanthomonas campestris pv. campestris str. 8004, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase3e-0651.2
NC_010717:4626178:462562446256244626181558Xanthomonas oryzae pv. oryzae PXO99A, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase7e-0650.1
NC_007705:755948:778033778033778590558Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase7e-0650.1